PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011100471.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family C3H
Protein Properties Length: 443aa    MW: 47504.3 Da    PI: 8.7895
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011100471.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-115378126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtGtC yG++C+F+H+
  XP_011100471.1 53 PGEPDCLYYLRTGTCGYGSNCRFNHP 78
                    5789*********************8 PP

2zf-CCCH36.39.7e-12100124327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      + C f+++tGtCkyG++Ck++H++
  XP_011100471.1 100 KPDCGFYLKTGTCKYGSTCKYHHPK 124
                     689********************96 PP

3zf-CCCH32.21.8e-10156178527
                     --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      C+++++tG CkyG  CkF+H++
  XP_011100471.1 156 ACPYYMQTGLCKYGYACKFHHPQ 178
                     7********************97 PP

4zf-CCCH37.15.3e-12280304226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++  G CkyG++CkF+H+
  XP_011100471.1 280 DQPECQYYMNHGSCKYGSNCKFHHP 304
                     689*********************8 PP

5zf-CCCH33.66.6e-11327350326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                      + C++++ +G CkyG++CkF H+
  XP_011100471.1 327 LPVCSYYSLYGLCKYGPTCKFDHP 350
                     589********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.4645280IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-65279IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-95478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65780IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-55877IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.74697125IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-598124IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-9100124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-6102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4103124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-6150179IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.751151179IPR000571Zinc finger, CCCH-type
SMARTSM003563.2E-5152178IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-8155178IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4155177IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-5278305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042278306IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9280304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-7280308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5284304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6323350IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.014324352IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-7324351IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-8327350IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4329349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MPGNRKLQRN AGLSSSSSSA ADKVEEVKGR LKMEGSDDNG GVGDDRGLFP DRPGEPDCLY  60
YLRTGTCGYG SNCRFNHPSN AGGQVHGVKN TSELPERAGK PDCGFYLKTG TCKYGSTCKY  120
HHPKDRQGDN RPKDSKPDSL ILLNILGLPM RQDGKACPYY MQTGLCKYGY ACKFHHPQPT  180
SAANVLPVVG PVYGSGASAV APSSGAPSVG EIPAPTLPKA TYFSSSLLHV PQSYMPIILS  240
PSQGWNTYTG SVSPLSVTSV LTAPASDGQL PVPYLPQRPD QPECQYYMNH GSCKYGSNCK  300
FHHPIKKITQ LPPSSLGPLG LPLRPGLPVC SYYSLYGLCK YGPTCKFDHP LDGYAYAYSL  360
SVPPLSAPYS PSSPYQSTSS LAPSSETSPS KPSKLNDWIK KGVPASNKSR HSNTKSGRDS  420
PDVSDSQPRS SKTSSEIMQN ESD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100471.10.0PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X1
TrEMBLA0A022RSU51e-169A0A022RSU5_ERYGU; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135711016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-75C3H family protein